bio.std.hts.bam.validation.samheader

Module for SAM header validation.

In order to implement your own validation behaviour, subclass AbstractSamHeaderValidator and define your own onError() methods.

Public Imports

bio.std.hts.sam.header public import bio.std.hts.sam.header;

Members

Classes

AbstractSamHeaderValidator class AbstractSamHeaderValidator: Abstract class encapsulating visitation of SAM header elements.

Enums

PgLineError enum PgLineError: @PG line validation error types.
RgLineError enum RgLineError: @RG line validation error types.
SamHeaderError enum SamHeaderError: SAM header validation error types.
SqLineError enum SqLineError: @SQ line validation error types.

Functions

isValid bool isValid(SamHeader header): Check if header is valid

Meta

Source

See Source File

bio std hts bam validation modules