biod ~meson (2022-05-07T11:17:22.3072764)
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_sam_alignment_eof_actions
bio
sam
utils
recordparser
Undocumented in source.
static
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_sam_alignment_eof_actions
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bio
sam
utils
recordparser
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parseAlignmentLine
static variables
_sam_alignment_actions
_sam_alignment_eof_actions
_sam_alignment_index_offsets
_sam_alignment_key_offsets
_sam_alignment_range_lengths
_sam_alignment_single_lengths
_sam_alignment_trans_actions
_sam_alignment_trans_keys
_sam_alignment_trans_targs
sam_alignment_en_alignment
sam_alignment_en_alignment_field_parsing_mandatoryfields_cigar_parsing
sam_alignment_en_alignment_field_parsing_mandatoryfields_flag_parsing
sam_alignment_en_alignment_field_parsing_mandatoryfields_mapq_parsing
sam_alignment_en_alignment_field_parsing_mandatoryfields_pnext_parsing
sam_alignment_en_alignment_field_parsing_mandatoryfields_pos_parsing
sam_alignment_en_alignment_field_parsing_mandatoryfields_qual_parsing
sam_alignment_en_alignment_field_parsing_mandatoryfields_rname_parsing
sam_alignment_en_alignment_field_parsing_mandatoryfields_rnext_parsing
sam_alignment_en_alignment_field_parsing_mandatoryfields_seq_parsing
sam_alignment_en_alignment_field_parsing_mandatoryfields_tlen_parsing
sam_alignment_en_alignment_tag_parsing
sam_alignment_en_recover_from_invalid_cigar
sam_alignment_en_recover_from_invalid_flag
sam_alignment_en_recover_from_invalid_mapq
sam_alignment_en_recover_from_invalid_pnext
sam_alignment_en_recover_from_invalid_pos
sam_alignment_en_recover_from_invalid_qname
sam_alignment_en_recover_from_invalid_qual
sam_alignment_en_recover_from_invalid_rname
sam_alignment_en_recover_from_invalid_rnext
sam_alignment_en_recover_from_invalid_seq
sam_alignment_en_recover_from_invalid_tag
sam_alignment_en_recover_from_invalid_tlen
sam_alignment_error
sam_alignment_first_final
sam_alignment_start