- sam_alignment_en_alignment
int sam_alignment_en_alignment;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_cigar_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_cigar_parsing;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_flag_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_flag_parsing;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_mapq_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_mapq_parsing;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_pnext_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_pnext_parsing;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_pos_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_pos_parsing;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_qual_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_qual_parsing;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_rname_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_rname_parsing;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_rnext_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_rnext_parsing;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_seq_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_seq_parsing;
Undocumented in source.
- sam_alignment_en_alignment_field_parsing_mandatoryfields_tlen_parsing
int sam_alignment_en_alignment_field_parsing_mandatoryfields_tlen_parsing;
Undocumented in source.
- sam_alignment_en_alignment_tag_parsing
int sam_alignment_en_alignment_tag_parsing;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_cigar
int sam_alignment_en_recover_from_invalid_cigar;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_flag
int sam_alignment_en_recover_from_invalid_flag;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_mapq
int sam_alignment_en_recover_from_invalid_mapq;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_pnext
int sam_alignment_en_recover_from_invalid_pnext;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_pos
int sam_alignment_en_recover_from_invalid_pos;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_qname
int sam_alignment_en_recover_from_invalid_qname;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_qual
int sam_alignment_en_recover_from_invalid_qual;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_rname
int sam_alignment_en_recover_from_invalid_rname;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_rnext
int sam_alignment_en_recover_from_invalid_rnext;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_seq
int sam_alignment_en_recover_from_invalid_seq;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_tag
int sam_alignment_en_recover_from_invalid_tag;
Undocumented in source.
- sam_alignment_en_recover_from_invalid_tlen
int sam_alignment_en_recover_from_invalid_tlen;
Undocumented in source.
- sam_alignment_error
int sam_alignment_error;
Undocumented in source.
- sam_alignment_first_final
int sam_alignment_first_final;
Undocumented in source.
- sam_alignment_start
int sam_alignment_start;
Undocumented in source.