bio.sam.header

Undocumented in source.

Members

PgLineDictionary alias PgLineDictionary = HeaderLineDictionary!PgLine: Dictionary of @PG lines
RgLineDictionary alias RgLineDictionary = HeaderLineDictionary!RgLine: Dictionary of @RG lines

HeaderLineDictionary class HeaderLineDictionary(T): Common class for storing header lines
SamHeader class SamHeader: Represents SAM header
SqLineDictionary class SqLineDictionary: Dictionary of @SQ lines.

__anonymous mixin HeaderLineStruct!("HdLine", "@HD", null, Field!("format_version", "VN"), Field!("sorting_order", "SO")): Undocumented in source.
__anonymous mixin HeaderLineStruct!("SqLine", "@SQ", "name", Field!("name", "SN"), Field!("length", "LN", uint), Field!("assembly", "AS"), Field!("md5", "M5"), Field!("species", "SP"), Field!("uri", "UR"), Field!("alternate_haplotype", "AH")): Undocumented in source.
__anonymous mixin HeaderLineStruct!("RgLine", "@RG", "identifier", Field!("identifier", "ID"), Field!("sequencing_center", "CN"), Field!("description", "DS"), Field!("date", "DT"), Field!("flow_order", "FO"), Field!("key_sequence", "KS"), Field!("library", "LB"), Field!("programs", "PG"), Field!("predicted_insert_size", "PI", int), Field!("platform", "PL"), Field!("platform_unit", "PU"), Field!("sample", "SM"), Field!("platform_model", "PM")): Undocumented in source.
__anonymous mixin HeaderLineStruct!("PgLine", "@PG", "identifier", Field!("identifier", "ID"), Field!("name", "PN"), Field!("command_line", "CL"), Field!("previous_program", "PP"), Field!("program_version", "VN")): Undocumented in source.