BamReader.reads

Range of all alignment records in the file.
Element type of the returned range depends on the policy. Default one is $(DPREF2 bam, readrange, withoutOffsets), in this case range element type is $(DPREF2 bam, read, BamRead).
The other option is $(DPREF2 bam, readrange, withOffsets), which allows to track read virtual offsets in the file. In this case range element type is $(DPREF2 bam, readrange, BamReadBlock).

this(undead.stream.Stream stream, TaskPool task_pool)
this(string filename, std.parallelism.TaskPool task_pool)
this(string filename)

Examples

import bio.bam.readrange;
...
auto bam = new BamReader("file.bam");
auto reads = bam.reads!withOffsets();
writeln(reads.front.start_virtual_offset);

BamReader.reads

Examples

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