SffReader

SFF file reader

class SffReader {

this(string filename);

SffRead getReadAtOffset(size_t offset);

string filename();

IndexLocation index_location();

bool has_index();

void index_location(IndexLocation location);

string flow_order();

string key_sequence();

}

Constructors

this this(string filename): Open file by filename

Members

Functions

filename string filename(): File name
flow_order string flow_order(): Nucleotides used for each flow of each read
getReadAtOffset SffRead getReadAtOffset(size_t offset)
has_index bool has_index()
index_location IndexLocation index_location(): Location of the index (if included).
index_location void index_location(IndexLocation location): Set index location (saves new index location to the file)
key_sequence string key_sequence(): Nucleotide bases of the key sequence used for each read
reads auto reads(): Reads

Meta

Source

See Implementation

bio std sff reader classes

SffReader