SffRead

SFF record

struct SffRead {

ushort[] flowgram_values;

ubyte[] flow_index_per_base;

char[] bases;

ubyte[] quality_scores;

ushort clip_qual_left;

ushort clip_qual_right;

ushort clip_adapter_left;

ushort clip_adapter_right;

ulong file_offset;

}

Members

Variables

bases char[] bases;: Basecalled nucleotide sequence
clip_adapter_left ushort clip_adapter_left;: Undocumented in source.
clip_adapter_right ushort clip_adapter_right;: Undocumented in source.
clip_qual_left ushort clip_qual_left;: Undocumented in source.
clip_qual_right ushort clip_qual_right;: Undocumented in source.
file_offset ulong file_offset;: Record start offset in the file
flow_index_per_base ubyte[] flow_index_per_base;: Undocumented in source.
flowgram_values ushort[] flowgram_values;: Homopolymer stretch estimates for each flow of the read
name string name;: Read identifier
quality_scores ubyte[] quality_scores;: Phred-scaled quality scores

Meta

Source

See Implementation

bio std sff read structs

SffRead