SamHeaderMerger

Class encapsulating functionality of merging several SAM headers into one. (In fact, its role is to just group several variables, so it could be replaced by a function returning a struct.)

class SamHeaderMerger {

enum Strategy;

Strategy strategy;

this(SamHeader[] headers, bool validate_headers);

SamHeader merged_header;

size_t[size_t][] ref_id_map;

string[string][] readgroup_id_map;

string[string][] program_id_map;

size_t[size_t][] ref_id_reverse_map;

}

Constructors

this this(SamHeader[] headers, bool validate_headers): Takes array of SAM headers as an input.

Members

Enums

Strategy enum Strategy: Undocumented in source.

Variables

merged_header SamHeader merged_header;: The main result of merging -- new SamHeader
program_id_map string[string][] program_id_map;: the same for program record identifiers
readgroup_id_map string[string][] readgroup_id_map;: the same for read group identifiers
ref_id_map size_t[size_t][] ref_id_map;: Map: index of SamHeader in input array of headers -> old refID -> new refID
ref_id_reverse_map size_t[size_t][] ref_id_reverse_map;: Map: index of SamHeader in input array of headers -> new refID -> old refID
strategy Strategy strategy;: Undocumented in source.

SamHeaderMerger

Constructors

Members

Enums

Variables

Meta

Source