EagerBamRead

BamRead wrapper which precomputes end_position = position + basesCovered().

Computation of basesCovered() takes quite a few cycles. Therefore in places where this property is frequently accessed, it makes sense to precompute it for later use.

The idea is that this should be a drop-in replacement for BamRead in algorithms, as the struct uses 'alias this' construction for the wrapped read.

struct EagerBamRead (

R = BamRead

) {

this(R read);

R read;

int end_position;

EagerBamRead dup();

}

Constructors

this this(R read)

Alias This

read

Members

Functions

dup EagerBamRead dup()

Variables

end_position int end_position;: End position on the reference, computed as position + basesCovered().
read R read;