biod ~master (2019-12-17T12:58:49Z)

BamRead.cigarString

bio std hts bam read BamRead

Human-readable representation of CIGAR string (same as in SAM format)

struct BamRead

const

string

cigarString

()

Meta

Source

See Implementation

bio std hts bam read BamRead constructors

this

functions

_recalculate_bin
associateWithReader
basesCovered
cigarString
dup
extended_cigar
is_slice_backed
opEquals
raw_data
reader
toJson
toMsgpack
toSam
toString
write

mixins

__anonymous

properties

base_qualities
bin
cigar
failed_quality_control
flag
is_duplicate
is_first_of_pair
is_paired
is_reverse_strand
is_second_of_pair
is_secondary_alignment
is_supplementary
is_unmapped
mapping_quality
mate_is_reverse_strand
mate_is_unmapped
mate_position
mate_ref_id
mate_ref_name
name
position
proper_pair
ref_id
ref_name
sequence
sequence_length
size_in_bytes
strand
template_length

structs

SequenceResult

variables

_chunk

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