- adjustTags
auto adjustTags(R reads_with_aux_info, TaskPool pool, size_t bufsize)
Undocumented in source. Be warned that the author may not have intended to support it.
- adjustTagsInRange
auto adjustTagsInRange(R read_with_aux_info)
Undocumented in source. Be warned that the author may not have intended to support it.
- compare
bool compare(T r1, T r2)
Undocumented in source. Be warned that the author may not have intended to support it.
- multiBamReads
auto multiBamReads(R reads, FileId index)
Undocumented in source. Be warned that the author may not have intended to support it.
- readRange
auto readRange(BamReader reader, SamHeaderMerger merger, FileId index)
Undocumented in source. Be warned that the author may not have intended to support it.
- readRange
auto readRange(BamReader reader, SamHeaderMerger merger, FileId index, int ref_id, uint start, uint end)
Undocumented in source. Be warned that the author may not have intended to support it.
- readRange
auto readRange(BamReader reader, SamHeaderMerger merger, FileId index, BamRegion[] regions)
Undocumented in source. Be warned that the author may not have intended to support it.
- readRangeWithProgress
auto readRangeWithProgress(BamReader reader, SamHeaderMerger merger, FileId index, void delegate() f, void delegate(lazy float) u)
Undocumented in source. Be warned that the author may not have intended to support it.
- readRanges
auto readRanges(BamReader[] readers, SamHeaderMerger merger)
Undocumented in source. Be warned that the author may not have intended to support it.
- readRanges
auto readRanges(BamReader[] readers, SamHeaderMerger merger, int ref_id, uint start, uint end)
Undocumented in source. Be warned that the author may not have intended to support it.
- readRanges
auto readRanges(BamReader[] readers, SamHeaderMerger merger, BamRegion[] regions)
Undocumented in source. Be warned that the author may not have intended to support it.
- readRangesWithProgress
auto readRangesWithProgress(BamReader[] readers, SamHeaderMerger merger, void delegate() f, void delegate(lazy float) delegate(size_t) u)
Undocumented in source. Be warned that the author may not have intended to support it.