MdOperation

Single MD operation.

struct MdOperation {

MdOperationType type();

void type(MdOperationType t);

bool is_deletion();

bool is_match();

bool is_mismatch();

uint match();

Base16 mismatch();

void mismatch(Base16 base);

NucleotideSequence deletion();

static MdOperation createMatch(uint match);

static MdOperation createDeletion(string deletion);

static MdOperation createMismatch(char mismatch);

static MdOperation createDeletion(NucleotideSequence seq);

static MdOperation createMismatch(Base16 base);

bool opEquals(const(MdOperation) other);

string toString();

}

Members

Functions

deletion NucleotideSequence deletion(): Deleted sequence
is_deletion bool is_deletion()
is_match bool is_match()
is_mismatch bool is_mismatch(): Convenience methods
match uint match(): The number of matched bases
mismatch Base16 mismatch()
void mismatch(Base16 base): Mismatched reference base
opEquals bool opEquals(const(MdOperation) other): Undocumented in source. Be warned that the author may not have intended to support it.
toString string toString(): Undocumented in source. Be warned that the author may not have intended to support it.
type MdOperationType type()
void type(MdOperationType t): Operation type

Static functions

createDeletion MdOperation createDeletion(string deletion): Undocumented in source. Be warned that the author may not have intended to support it.
createDeletion MdOperation createDeletion(NucleotideSequence seq): Undocumented in source. Be warned that the author may not have intended to support it.
createMatch MdOperation createMatch(uint match): Undocumented in source. Be warned that the author may not have intended to support it.
createMismatch MdOperation createMismatch(char mismatch): Undocumented in source. Be warned that the author may not have intended to support it.
createMismatch MdOperation createMismatch(Base16 base): Undocumented in source. Be warned that the author may not have intended to support it.

Meta

Source

See Implementation

bio std hts bam md operation enums

MdOperationType

functions

reverseMdOp

structs

MdOperation