CigarOperation

Represents single CIGAR operation

struct CigarOperation {

this(uint length, char operation_type);

this(uint _raw);

uint length();

bool is_query_consuming();

bool is_reference_consuming();

bool is_match_or_mismatch();

bool is_clipping();

void toSam(Sink sink);

void toString(void delegate(const(char)[]) sink);

}

Constructors

this this(uint length, char operation_type): Length must be strictly less than 2^28.
Operation type must be one of M, I, D, N, S, H, P, =, X.
this this(uint _raw): Undocumented in source.

Members

Functions

is_clipping bool is_clipping(): True iff operation is one of 'S', 'H'
is_match_or_mismatch bool is_match_or_mismatch(): True iff operation is one of M, =, X
is_query_consuming bool is_query_consuming(): True iff operation is one of M, =, X, I, S
is_reference_consuming bool is_reference_consuming(): True iff operation is one of M, =, X, D, N
length uint length(): Operation length
toSam void toSam(Sink sink): Undocumented in source. Be warned that the author may not have intended to support it.
toString void toString(void delegate(const(char)[]) sink): Undocumented in source. Be warned that the author may not have intended to support it.
type char type(): CIGAR operation as one of MIDNSHP=X. Absent or invalid operation is represented by '?'

Meta

Source

See Implementation

bio std hts bam cigar aliases

CigarOperations

functions

structs