BgzfStream

Streams bgzf data and fetch items by unit or buffer. These can go beyond the size of individual blocks(!)

struct BgzfStream {

BgzfReader bgzf;

FilePos fpos;

ubyte[] uncompressed_buf;

size_t uncompressed_size;

Nullable!int block_pos;

BlockReadUnbuffered blockread;

this(string fn);

bool eof [@property getter];

ubyte[] fetch(ubyte[] buffer);

string read(size_t len);

T[] read(T[] buffer);

}

Constructors

this this(string fn): Undocumented in source.

Postblit

this(this) this(this): Undocumented in source.

Members

Functions

fetch ubyte[] fetch(ubyte[] buffer): Fetch data into buffer. The size of the buffer can be larger than one or more multiple blocks
read int read(): Undocumented in source. Be warned that the author may not have intended to support it.
read string read(size_t len): Undocumented in source. Be warned that the author may not have intended to support it.
read T[] read(T[] buffer): Undocumented in source. Be warned that the author may not have intended to support it.

Properties

eof bool eof [@property getter]: Undocumented in source. Be warned that the author may not have intended to support it.

Variables

bgzf BgzfReader bgzf;: Undocumented in source.
block_pos Nullable!int block_pos;: Undocumented in source.
blockread BlockReadUnbuffered blockread;: Undocumented in source.
fpos FilePos fpos;: Undocumented in source.
uncompressed_buf ubyte[] uncompressed_buf;: Undocumented in source.
uncompressed_size size_t uncompressed_size;: Undocumented in source.

Meta

Source

See Implementation

bio std experimental hts bgzf aliases

classes

BgzfException

functions

properties

structs