KMer

Represents k-mer of ACGT bases of length no more than 32.

struct KMer (

uint K

) if (

K <= 32

) {

static Base5 code2base(int code);

static int char2code(char base);

this(S sequence);

struct KMerSequence;

KMerSequence sequence();

}

Constructors

this this(S id): Construct by ID
this this(S sequence): Construct from sequence. Takes bases from the provided sequence until K symbols 'A/C/G/T' are found. That is, 'N' and other ambiguous bases are skipped.

Members

Functions

id ulong id(): Unique ID
sequence KMerSequence sequence(): Sequence corresponding to the k-mer

Static functions

char2code int char2code(char base): Undocumented in source. Be warned that the author may not have intended to support it.
code2base Base5 code2base(int code): Undocumented in source. Be warned that the author may not have intended to support it.

Structs

KMerSequence struct KMerSequence: Undocumented in source.

Meta

Source

See Implementation

bio core kmer structs

KMer