bio2.bgzf

Undocumented in source.

Members

BLOCK_SIZE alias BLOCK_SIZE = BGZF_MAX_BLOCK_SIZE: Undocumented in source.
BlockBuffer alias BlockBuffer = ubyte[BLOCK_SIZE]: Undocumented in source.
CRC32 alias CRC32 = immutable(uint): Undocumented in source.
FilePos alias FilePos = Nullable!ulong: Undocumented in source.

deflate ubyte[] deflate(ubyte[] uncompressed_buf, ubyte[] compressed_buf, size_t uncompressed_size, CRC32 crc32): Uncompress a zlib buffer (without header)
kick_off_reading_block_ahead int kick_off_reading_block_ahead(ubyte[] uncompressed_buf, ubyte[] compressed_buf, size_t uncompressed_size, CRC32 crc32): Undocumented in source. Be warned that the author may not have intended to support it.
read_blockx Tuple!(size_t, FilePos) read_blockx(BgzfReader bgzf, FilePos fpos, ubyte[] uncompressed_buf): Undocumented in source. Be warned that the author may not have intended to support it.

read_ubyte ubyte read_ubyte [@property getter]: Undocumented in source. Be warned that the author may not have intended to support it.
read_uint uint read_uint [@property getter]: Undocumented in source. Be warned that the author may not have intended to support it.
read_ushort ushort read_ushort [@property getter]: Undocumented in source. Be warned that the author may not have intended to support it.

BgzfBlocks struct BgzfBlocks: Simple block iterator
BgzfReader struct BgzfReader: BgzfReader is designed to run on a single thread. All it does is fetch block headers and data, so the thread should easily keep up with IO. All data processing is happening lazily in other threads.
BgzfStream struct BgzfStream: Streams bgzf data and fetch items by unit or buffer. These can go beyond the size of individual blocks(!)
BlockReadAhead struct BlockReadAhead
BlockReadUnbuffered struct BlockReadUnbuffered