bio.core.sequence

Undocumented in source.

Public Imports

NucleotideSequence alias NucleotideSequence = ReturnType!(nucleotideSequence!SliceableString)
SliceableString alias SliceableString = ReturnType!sliceableString

identity T identity(T t): Identity function
nucleotideSequence auto nucleotideSequence(R bases, bool reverse): Create nucleotide sequence from bidirectional base range.
reversableRange ReversableRange!(reverseTransform, R) reversableRange(R range, bool reverse): Create reversable range from bidirectional one.
sliceableString auto sliceableString(string s): Returns an object very similar to string, but sliceable. Tricks std.traits.isNarrowString.

ReversableRange struct ReversableRange(alias reverseTransform = identity, R): Range that allows to unify operations in forward and reverse directions without virtual function call overhead introduced by inputRangeObject.

Sequence template Sequence(R): Sequence of bases. Element of reversed range will be complemented.