Call

A genotype call

struct Call (

B

) {

alias G = Gt!B;

this(string sample, string chr, ulong pos, B refbase, G genotype, float quality);

string sample();

string chromosome();

ulong position();

B reference_base();

const(G) genotype();

float quality();

bool is_variant();

}

Constructors

this this(string sample, string chr, ulong pos, B refbase, G genotype, float quality): Constructor

Alias This

Members

Aliases

G alias G = Gt!B: Undocumented in source.

Functions

chromosome string chromosome(): Chromosome name
genotype const(G) genotype(): Most probable genotype
is_variant bool is_variant(): Returns true if this call is not a reference one.
position ulong position(): 0-based position on the reference
quality float quality(): Phred-scaled quality score. If unknown, set to NaN.
reference_base B reference_base(): Reference base at the site
sample string sample(): Sample name

Meta

Source

See Implementation

bio core call aliases

structs

Call